NASC Stock Detail Page
NASC ID: N539100
Name: SALK_039100
ABRC stock number: SALK_039100
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_039100.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT3G27770.1 (at chr 3 pos 10287810 (C/10287810-10287871) on the TAIR10). The sequences' 1-62 bps mapped on the genome, 60-79 bps onto the T-DNA. Pools P 10, R 2, C 8 N 6. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO344647. SALKseq_039100.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT1G08830.1 (at chr 1 pos 2827472 (C/2827472-2827524) on the TAIR10). The sequences' 1-53 bps mapped on the genome, 49-75 bps onto the T-DNA. Pools P 10, R 2, C 8 N 6. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO341291. SALKseq_039100.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT3G31422.1 (at chr 3 pos 12795501 (W/12795462-12795501) on the TAIR10). The sequences' 1-40 bps mapped on the genome, 38-72 bps onto the T-DNA. Pools P 10, R 2, C 8 N 6. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO347996.
Donation Date: 2002-01-01
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_039100
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N662170 (SALK_039100C).
| Status | Price (£) |
|---|---|
| Available to order at NASC | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.