NASC

NASC ID: N546305

Name: SALK_046305

ABRC stock number: SALK_046305

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

March 2002 TAIR gene annotation: F14O4.2 Exon Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation At2g13410.

Associated Polymorphisms:

SALKseq_046305.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G13410 (at chr 2 pos 5583047 (W/5582995-5583047) on the TAIR10). The sequences' 1-53 bps mapped on the genome, 51-71 bps onto the T-DNA. Pools P 15, R 14, C 17 N 14. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO358359.

SALKseq_046305.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G15860.1 (at chr 2 pos 6906910 (W/6906832-6906910) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 15, R 14, C 17 N 14. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO361706.

SALKseq_046305.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G20460.1 (at chr 4 pos 11031782 (W/11031724-11031782) on the TAIR10). The sequences' 1-59 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 15, R 14, C 17 N 14. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO365058.

SALKseq_046305.4 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT5G04220.1 (at chr 5 pos 1159067 (W/1159000-1159067) on the TAIR10). The sequences' 1-68 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 15, R 14, C 17 N 14. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO368399.

SALKseq_046305.5 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G20340.1 (at chr 5 pos 6874886 (W/6874835-6874886) on the TAIR10). The sequences' 1-52 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 15, R 14, C 17 N 14. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO371755.

Donation Date: 2002-03-21

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_046305

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N662335 (SALK_046305C).

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT2G15860 AT4G20460 AT5G04220 AT5G20340 At2g13410

EMBL accession:

BH755025

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.