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The European Arabidopsis Stock Centre

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NASC ID: N546886

Name: SALK_046886

ABRC stock number: SALK_046886

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

Associated Polymorphisms:

SALKseq_046886.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G55860.1 (at chr 1 pos 20895334 (W/20895256-20895334) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 18, R 20, C 13 N 13. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO375137.

SALKseq_046886.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT1G08010.1 (at chr 1 pos 2487758 (W/2487680-2487758) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 18, R 20, C 13 N 13. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO378485.

SALKseq_046886.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G25310.1 and AT1G25320.1=P355 (at chr 1 pos 8875365 (C/8875365-8875420) on the TAIR10). The sequences' 1-56 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 18, R 20, C 13 N 13. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO381831.

SALKseq_046886.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT5G48640.1 (at chr 5 pos 19725846 (W/19725783-19725846) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 18, R 20, C 13 N 13. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO385181.

Donation Date: 2002-01-02

Donated by:  The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_046886

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_046886C.

Status Price (£)
Available £7.50

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Allele: Locus: AGI code:
EMBL accession:

Phenotype

Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation - At1g55860 F14J16.37 Intron

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.