NASC Stock Detail Page
NASC ID: N549016
Name: SALK_049016
ABRC stock number: SALK_049016
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_049016.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G48110.1 and AT5G48120.1=UTR3 (at chr 5 pos 19504919 (W/19504868-19504919) on the TAIR10). The sequences' 1-52 bps mapped on the genome, 58-79 bps onto the T-DNA. Pools P 20, R 19, C 14 N 14. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO391975. SALKseq_049016.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT2G02080.1 (at chr 2 pos 521529 (W/521472-521529) on the TAIR10). The sequences' 1-58 bps mapped on the genome, 56-79 bps onto the T-DNA. Pools P 20, R 19, C 14 N 14. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO385296. SALKseq_049016.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT5G09520.1 (at chr 5 pos 2958425 (W/2958347-2958425) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 20, R 19, C 14 N 14. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO395330. SALKseq_049016.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G27080.1 (at chr 4 pos 13591493 (W/13591438-13591493) on the TAIR10). The sequences' 1-56 bps mapped on the genome, 55-79 bps onto the T-DNA. Pools P 20, R 19, C 14 N 14. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO388642.
Donation Date: 2002-03-21
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_049016
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N664597 (SALK_049016C).
| Status | Price (£) |
|---|---|
| Available to order at NASC | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.