Home | About NASC | Address/Staff
Ask a question | Help

NASC

Please note that due to the global coronavirus epidemic orders placed with NASC may take longer than usual to reach you

NASC Stock Detail Page

NASC ID: N555899

Name: SALK_055899

ABRC stock number: SALK_055899

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

Associated Polymorphisms:

SALKseq_055899.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT5G25757.1 (at chr 5 pos 8967542 (W/8967500-8967542) on the TAIR10). The sequences' 1-43 bps mapped on the genome, 45-78 bps onto the T-DNA. Pools P 30, R 25, C 23 N 22. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO352143.
SALKseq_055899.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G43405 and AT5G43410.1 (at chr 5 pos 17434533 (W/17434478-17434533) on the TAIR10). The sequences' 1-56 bps mapped on the genome, 46-76 bps onto the T-DNA. Pools P 30, R 25, C 23 N 22. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO348785.

Donation Date: 2002-01-07

Donated by:  The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_055899

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N662532 (SALK_055899C).

Status Price (£)
Available to order at NASC £7.50

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Allele: Locus: AGI code:
EMBL accession:

Phenotype

Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.