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NASC Stock Detail Page

NASC ID: N556637

Name: SALK_056637

ABRC stock number: SALK_056637

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

March 2002 TAIR gene annotation: F5O11.15 R300-5' Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation At1g12430.

Associated Polymorphisms:

SALKseq_056637.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT2G34500.1 (at chr 2 pos 14541733 (W/14541665-14541733) on the TAIR10). The sequences' 1-69 bps mapped on the genome, 74-95 bps onto the T-DNA. Pools P 30, R 21, C 22 N 29. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO362200.
SALKseq_056637.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT2G47740 (at chr 2 pos 19559929 (W/19559852-19559929) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 30, R 21, C 22 N 29. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO365549.

Donation Date: 2002-03-21

Donated by:  The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_056637

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N662545 (SALK_056637C).

Status Price (£)
Available £7.50

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Allele: Locus: AGI code:

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.