NASC Stock Detail Page
NASC ID: N564073
Name: SALK_064073
ABRC stock number: SALK_064073
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_064073.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G39720.1 (at chr 2 pos 16568434 (W/16568375-16568434) on the TAIR10). The sequences' 1-60 bps mapped on the genome, 57-78 bps onto the T-DNA. Pools P 42, R 47, C 45 N 41. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO409458. SALKseq_064073.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G10682=P355 and AT1G10690.1=UTR3 (at chr 1 pos 3549857 (W/3549788-3549857) on the TAIR10). The sequences' 1-70 bps mapped on the genome. Pools P 42, R 47, C 45 N 41. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO406117. SALKseq_064073.101 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G52040.4=UTR3 and AT5G52050.1=P355 (at chr 5 pos 21138353 (C/21138353-21138390) on the TAIR10). The sequences' 1-38 bps mapped on the genome, 44-70 bps onto the T-DNA. Pools P 42, R 47, C 45 N 41. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO412811.
Donation Date: 2002-05-31
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_064073
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock is only available on request as a homozygous/confirmed stock has replaced it. The replacement line is SALK_064073C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.