NASC Stock Detail Page
NASC ID: N579046
Name: SALK_079046
ABRC stock number: SALK_079046
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. July 2002 TAIR gene annotation - At1g59750. F23H11.7 Exon. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_079046.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G59750.1 (at chr 1 pos 21983782 (W/21983732-21983782) on the TAIR10). The sequences' 1-51 bps mapped on the genome, 48-69 bps onto the T-DNA. Pools P 65, R 61, C 69 N 66. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO417084. SALKseq_079046.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G07720 and AT2G07791.1 (at chr 2 pos 3558324 (W/3558246-3558324) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 65, R 61, C 69 N 66. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO420400. SALKseq_079046.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT5G36990.1 (at chr 5 pos 14616509 (W/14616451-14616509) on the TAIR10). The sequences' 1-59 bps mapped on the genome, 56-73 bps onto the T-DNA. Pools P 65, R 61, C 69 N 66. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO423716.
Donation Date: 2002-01-07
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_079046
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N663064 (SALK_079046C).
| Status | Price (£) |
|---|---|
| Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
|---|---|---|---|
|
|
|
|
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.