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NASC ID: N586597

Name: SALK_086597

ABRC stock number: SALK_086597

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

July 2002 TAIR gene annotation - At3g13960. MDC16.8 Intron. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_086597.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G13960.1 (at chr 3 pos 4609002 (W/4608924-4609002) on the TAIR10). The sequences' 1-79 bps mapped on the genome, 73-95 bps onto the T-DNA. Pools P 74, R 76, C 76 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO431700.

SALKseq_086597.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G56010.2=P355 and AT1G56020.1=P355 (at chr 1 pos 20950234 (C/20950234-20950309) on the TAIR10). The sequences' 2-77 bps mapped on the genome, 75-95 bps onto the T-DNA. Pools P 74, R 76, C 76 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO421753.

SALKseq_086597.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G65620.4=UTR3 and AT1G65630.1 (at chr 1 pos 24406426 (W/24406366-24406426) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 74, R 76, C 76 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO425070.

SALKseq_086597.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G28375.1=UTR3 and AT1G28380.1=P355 (at chr 1 pos 9962922 (C/9962922-9962988) on the TAIR10). The sequences' 1-67 bps mapped on the genome, 60-78 bps onto the T-DNA. Pools P 74, R 76, C 76 N 79. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO428384.

Donation Date: 2002-01-07

Donated by:  The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_086597

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: This segregating stock is only available on request as a homozygous/confirmed stock has replaced it. The replacement line is SALK_086597C.

Status Price (£)
Available £10.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Allele: Locus: AGI code:
EMBL accession:

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.