NASC

NASC ID: N638745

Name: SALK_138745

ABRC stock number: SALK_138745

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

February 2003 TAIR gene annotation - At2g17050 F6P23.2 0 Exon F6P23.2 0 Exon. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_138745.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G17050.1 (at chr 2 pos 7413692 (W/7413614-7413692) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 3, R 3, C 8 N 4. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO384239.

SALKseq_138745.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT3G03272.1 (at chr 3 pos 764581 (W/764544-764581) on the TAIR10). The sequences' 1-38 bps mapped on the genome, 48-79 bps onto the T-DNA. Pools P 3, R 3, C 8 N 4. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO387589.

SALKseq_138745.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G49730.1 (around chr 5 pos 20204000 on the TAIR10). The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO416579.

SALKseq_138745.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G49740.1 (at chr 5 pos 20208286 (W/20208235-20208286) on the TAIR10). The sequences' 1-52 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 3, R 3, C 8 N 4. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO394283.

Donation Date: 2003-03-11

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_138745

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: This segregating stock is only available on request as a homozygous/confirmed stock has replaced it. The replacement line is SALK_138745C.

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT3G03272 AT5G49730 AT5G49740 At2g17050

EMBL accession:

BZ767366

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.