NASC Stock Detail Page
NASC ID: N638993
Name: SALK_138993
ABRC stock number: SALK_138993
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.February 2003 TAIR gene annotation - At5g08170 T22D6.1 10 Exon T22D6.1 10 Exon. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_138993.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G08170.1 (at chr 5 pos 2630024 (W/2629976-2630024) on the TAIR10). The sequences' 1-49 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 63, R 67, C 61 N 68. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO377564. SALKseq_138993.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G38280.1 (at chr 2 pos 16035280 (C/16035280-16035308) on the TAIR10). The sequences' 1-29 bps mapped on the genome, 35-75 bps onto the T-DNA. Pools P 63, R 67, C 61 N 68. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO370857. SALKseq_138993.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G14440.1=P355 and AT3G14450.1 (at chr 3 pos 4843443 (C/4843443-4843484) on the TAIR10). The sequences' 1-42 bps mapped on the genome, 52-79 bps onto the T-DNA. Pools P 63, R 67, C 61 N 68. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO374207.
Donation Date: 2003-03-11
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_138993
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N658941 (SALK_138993C).
| Status | Price (£) |
|---|---|
| Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.