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NASC ID: N531480

Name: SALK_031480

ABRC stock number: SALK_031480

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

December 2002 TAIR gene annotation - At2g43360 T1O24.10 R300-5' At2g43370 T1O24.11 L300-5' Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_031480.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT2G43360.1 (at chr 2 pos 18013252 (W/18013221-18013252) on the TAIR10). The sequences' 1-32 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 8, R 7, C 2 N 6. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO394478.

SALKseq_031480.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G14350.1=P355 and AT3G14360.1=P355 (at chr 3 pos 4788346 (W/4788268-4788346) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 8, R 7, C 2 N 6. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO397822.

Donation Date: 2003-01-30

Donated by:  The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_031480

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_031480C.

Status Price (£)
Available £7.50

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Allele: Locus: AGI code:

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.