NASC Stock Detail Page
NASC ID: N534472
Name: SALK_034472
ABRC stock number: SALK_034472
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_034472.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G17170.1 (at chr 1 pos 5870024 (W/5869968-5870024) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 60-79 bps onto the T-DNA. Pools P 8, R 10, C 10 N 3. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO381221. SALKseq_034472.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G41795=P355 and AT1G41797.1 (around chr 1 pos 15557958 on the TAIR10). The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO414673. SALKseq_034472.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G29950.1 (at chr 4 pos 14657778 (W/14657725-14657778) on the TAIR10). The sequences' 1-54 bps mapped on the genome, 50-79 bps onto the T-DNA. Pools P 8, R 10, C 10 N 3. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO384574. SALKseq_034472.4 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT5G32516 and AT5G32521.1 (at chr 5 pos 12168723 (W/12168645-12168723) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 8, R 10, C 10 N 3. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO387921.
Donation Date: 2001-01-12
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_034472
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N665738 (SALK_034472C).
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.