NASC Stock Detail Page
NASC ID: N537106
Name: SALK_037106
ABRC stock number: SALK_037106
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_037106.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G25330.1 and AT2G25340.1 (at chr 2 pos 10791367 (W/10791315-10791367) on the TAIR10). The sequences' 1-53 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 2, R 9, C 10 N 8. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO377992. SALKseq_037106.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G25320.1 (at chr 2 pos 10787856 (W/10787778-10787856) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 2, R 9, C 10 N 8. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO374644. SALKseq_037106.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G20921.1 and AT2G20930.1=UTR3 (at chr 2 pos 9000302 (W/9000249-9000302) on the TAIR10). The sequences' 1-54 bps mapped on the genome, 60-79 bps onto the T-DNA. Pools P 2, R 9, C 10 N 8. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO381331. SALKseq_037106.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT5G47010.1 (at chr 5 pos 19079205 (W/19079127-19079205) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 2, R 9, C 10 N 8. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO384688.
Donation Date: 2002-01-02
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_037106
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_037106C.
| Status | Price (£) |
|---|---|
| Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation - At2g25330 T22F11.8 R300-5'
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.