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The European Arabidopsis Stock Centre

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NASC ID: N548853

Name: SALK_048853

ABRC stock number: SALK_048853

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

Associated Polymorphisms:

SALKseq_048853.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT3G18640.1 (at chr 3 pos 6416041 (W/6415978-6416041) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 58-78 bps onto the T-DNA. Pools P 23, R 27, C 26 N 22. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO348464.

SALKseq_048853.001 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT4G26650.1 (at chr 4 pos 13444953 (W/13444876-13444953) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 23, R 27, C 26 N 22. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO351822.

SALKseq_048853.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT1G01290.1 (at chr 1 pos 114189 (C/114189-114239) on the TAIR10). The sequences' 1-51 bps mapped on the genome, 60-78 bps onto the T-DNA. Pools P 23, R 27, C 26 N 22. The insertion site is at the 3' end of the sequence mapping. Genbank Acc KO412019.

SALKseq_048853.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G40113.1=UTR3 and AT2G40116.1=P355 (at chr 2 pos 16751249 (W/16751210-16751249) on the TAIR10). The sequences' 1-40 bps mapped on the genome, 52-75 bps onto the T-DNA. Pools P 23, R 27, C 26 N 22. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO341764.

SALKseq_048853.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G40120.1=P355 and AT2G40130.1=P355 (at chr 2 pos 16760840 (W/16760788-16760840) on the TAIR10). The sequences' 1-53 bps mapped on the genome, 59-78 bps onto the T-DNA. Pools P 23, R 27, C 26 N 22. The insertion site is at the 3' end of the sequence mapping. Genbank Acc. KO345121.

Donation Date: 2002-01-02

Donated by:  The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_048853

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_048853C.

Status Price (£)
Available £11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene: Allele: Locus: AGI code:
EMBL accession:

Phenotype

Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.