NASC

NASC ID: N555841

Name: SALK_055841

ABRC stock number: SALK_055841

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

March 2002 TAIR gene annotation: MBB18.4 Exon Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2 : gene annotation At5g38510.

Associated Polymorphisms:

SALKseq_055841.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G38510.1 (at chr 5 pos 15418023 (W/15417961-15418023) on the TAIR10). The sequences' 1-63 bps mapped on the genome, 64-95 bps onto the T-DNA. Pools P 29, R 25, C 23 N 29. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO365507.

SALKseq_055841.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G18400.1 (at chr 4 pos 10170414 (W/10170341-10170414) on the TAIR10). The sequences' 1-74 bps mapped on the genome, 75-95 bps onto the T-DNA. Pools P 29, R 25, C 23 N 29. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO358813.

SALKseq_055841.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G61570.1 (at chr 5 pos 24759964 (W/24759888-24759964) on the TAIR10). The sequences' 1-77 bps mapped on the genome, 74-95 bps onto the T-DNA. Pools P 29, R 25, C 23 N 29. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO368850.

SALKseq_055841.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT4G36820.1 and AT4G36830.1=P355 (at chr 4 pos 17348177 (C/17348177-17348247) on the TAIR10). The sequences' 1-71 bps mapped on the genome, 78-95 bps onto the T-DNA. Pools P 29, R 25, C 23 N 29. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO362157.

Donation Date: 2002-03-21

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_055841

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N666094 (SALK_055841C).

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT4G18400 AT4G36820 AT4G36830 AT5G61570 At5g38510

EMBL accession:

BH757269

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.