NASC Stock Detail Page
NASC ID: N593548
Name: SALK_093548
ABRC stock number: SALK_093548
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. August 2002 TAIR gene annotation - F27H5.40 R300-5', At3g60250. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_093548.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT3G60250.1 (at chr 3 pos 22272154 (C/22272154-22272218) on the TAIR10). The sequences' 1-65 bps mapped on the genome, 67-95 bps onto the T-DNA. Pools P 80, R 79, C 78 N 74. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO432765. SALKseq_093548.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G33760.1=UTR3 and AT1G33770.1 (at chr 1 pos 12239888 (W/12239811-12239888) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 80, R 79, C 78 N 74. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO429452. SALKseq_093548.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G40510.1 (at chr 5 pos 16230400 (C/16230400-16230476) on the TAIR10). The sequences' 1-77 bps mapped on the genome, 77-99 bps onto the T-DNA. Pools P 80, R 79, C 78 N 74. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO436074.
Donation Date: 2002-01-09
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_093548
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_093548C.
Status | Price (£) |
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Currently unavailable | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.