NASC Stock Detail Page
NASC ID: N594511
Name: SALK_094511
ABRC stock number: SALK_094511
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_094511.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G09225.1 (at chr 5 pos 2869770 (W/2869719-2869770) on the TAIR10). The sequences' 1-52 bps mapped on the genome, 50-76 bps onto the T-DNA. Pools P 33, R 36, C 40 N 40. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO429531. SALKseq_094511.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT1G67060.1 (at chr 1 pos 25039342 (W/25039307-25039342) on the TAIR10). The sequences' 1-36 bps mapped on the genome, 54-78 bps onto the T-DNA. Pools P 33, R 36, C 40 N 40. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO419583. SALKseq_094511.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT1G14820.2 (at chr 1 pos 5107122 (W/5107060-5107122) on the TAIR10). The sequences' 1-63 bps mapped on the genome, 60-78 bps onto the T-DNA. Pools P 33, R 36, C 40 N 40. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO422901. SALKseq_094511.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT2G36630.1 (at chr 2 pos 15355367 (W/15355309-15355367) on the TAIR10). The sequences' 1-59 bps mapped on the genome, 60-78 bps onto the T-DNA. Pools P 33, R 36, C 40 N 40. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO426218.
Donation Date: 2002-01-10
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_094511
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N666789 (SALK_094511C).
| Status | Price (£) |
|---|---|
| Available to order at NASC | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.