NASC Stock Detail Page
NASC ID: N633919
Name: SALK_133919
ABRC stock number: SALK_133919
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_133919.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT1G50710.1 (at chr 1 pos 18787932 (W/18787877-18787932) on the TAIR10). The sequences' 1-56 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 44, R 49, C 46 N 49. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO400736. SALKseq_133919.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G36550.1 (at chr 1 pos 13796239 (W/13796161-13796239) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 44, R 49, C 46 N 49. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO394056. SALKseq_133919.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT2G06890.1 (around chr 2 pos 2794845 on the TAIR10). The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO416464. SALKseq_133919.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G41746.1 (at chr 1 pos 15520247 (W/15520182-15520247) on the TAIR10). The sequences' 1-67 bps mapped on the genome. Pools P 44, R 49, C 46 N 49. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO397392. SALKseq_133919.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G32895.1 (at chr 3 pos 13431397 (W/13431348-13431397) on the TAIR10). The sequences' 1-50 bps mapped on the genome, 57-78 bps onto the T-DNA. Pools P 44, R 49, C 46 N 49. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO407406.
Donation Date: 2003-03-11
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_133919
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock is only available on request as a homozygous/confirmed stock has replaced it. The replacement line is SALK_133919C.
| Status | Price (£) |
|---|---|
| Available to order at NASC | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.