NASC Stock Detail Page
NASC ID: N636638
Name: SALK_136638
ABRC stock number: SALK_136638
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. February 2003 TAIR gene annotation - At3g55290 T26I12. 17 0 Intron T26I12. 17 0 Intron. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_136638.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G55290.1 (at chr 3 pos 20502736 (W/20502692-20502736) on the TAIR10). The sequences' 1-46 bps mapped on the genome, 52-78 bps onto the T-DNA. Pools P 40, R 38, C 32 N 34. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO387486. SALKseq_136638.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G33280.1 and AT2G33290.1=P355 (at chr 2 pos 14108496 (W/14108451-14108496) on the TAIR10). The sequences' 1-46 bps mapped on the genome, 45-70 bps onto the T-DNA. Pools P 40, R 38, C 32 N 34. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO384136. SALKseq_136638.101 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT3G12270.1 (at chr 3 pos 3912851 (C/3912851-3912911) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 55-78 bps onto the T-DNA. Pools P 40, R 38, C 32 N 34. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO390827.
Donation Date: 2003-03-11
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_136638
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: This segregating stock has been superseded by a homozygous/confirmed stock which can be ordered as an alternative. The replacement line is N667427 (SALK_136638C).
Status | Price (£) |
---|---|
Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
---|---|---|---|
|
|
|
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.